CoalFace - Wayne Delport & Michael Cunningham

CoalFace is a simulation of the coalescent process with the visual display of gene genealogies. CoalFace has been developed predominantly as a teaching tool, yet some basic coalescent simulation analyses can be performed. Both Windows and Linux (Intel) executables are available.

Windows:
Download the zip archive and extract to a local directory. Run the executable 'CoalFace'. A simple manual is included in the 'doc' folder.

Linux:
Download the tarball and extract using '$ tar -zxvf CoalFace0.4b.tar.gz'. This will produce a shell script and associated directories in a folder called 'CoalFace'. Run the shell script by typing '$ ./CoalFace'.

RanDis - Wayne Delport

RanDis is a program that produces random numbers (0-1) from a required continuous or discrete distribution. The program simply produces an output .csv file that can be imported into excel, matlab or something of the like. Windows and Linux (Intel) executables are available.

Windows:
Download the zip archive and extract to a local directory. Run the executable 'RanDis'

Linux:
Download the tarball and extract using '$ tar -zxvf RanDis0.2b.tar.gz'. This will produce a shell script and associated directories in a folder called 'RanDis'. Run the shell script by typing '$ ./RanDis'.

RandoChi - Wayne Delport

RandoChi is a gui program that performs chi-square permutation tests to detect significant deviations from random in contingency tables. The input file is simply a contingency table (an example is provided). Windows and Linux (Intel) executables are available.

Windows:
Download the zip archive and extract to a local directory. Run the executable 'RandoChi'

Linux:
Download the tarball and extract using '$ tar -zxvf RandoChi0.2.tar.gz'. This will produce a shell script and associated directories in a folder called 'RandoChi'. Run the shell script by typing '$ ./RandoChi'.

Please report bugs to Bug Report.